PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P06660_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 471aa    MW: 50709.8 Da    PI: 9.7941
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P06660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.21.7e-35164238274
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                            +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el++++  s+s++   
  GSMUA_Achr5P06660_001 164 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMKNAKAAIDELAELPPWSPSATtiG 238
                            79**************************************************************44444333221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-31164229IPR005333Transcription factor, TCP
PROSITE profilePS5136934.039166224IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAKASSRRPN ISSATRKCYQ FSSRRGRRKL RETRSSSRRQ LVRSKAGTGA QEEGAGSGSA  60
EESREEQSLR GFQLHQIHHN RSSYFSSSSS SAATASSSEY ACLPERIGEG HSHNSAGYDQ  120
LALLHHHHQQ QLQRPQPRSR HGGARGGAVG EIVEVQGGHI VRSTGRKDRH SKVCTAKGPR  180
DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLMKNAKAA IDELAELPPW SPSATTIGES  240
SSKPVAVADP ALSTAFSFGV GGGDGGNEGN TFLPPSLDTD SIADTIKSFF PMAAAATPPS  300
SSPSIGFLSY SPELPSRTSG QAQDLRLSLQ SFQDPIFHDP ESGHHHHHHH SHHRIAPWNM  360
VDSSGGGGGY VFSFPPPQAA PLHSLLGQSL FFSQRGPLQS SNSPAVRAWA DPVDAAADHR  420
MQPALYSSMP SIGFASGASF PGFRIPARIQ GEEEHDGHND KPPSAASASR H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430RGRRKLR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6626111e-71KM662611.1 Ananas bracteatus clone 46469a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400132.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR59e-94TCP4_ARATH; Transcription factor TCP4
TrEMBLM0SW950.0M0SW95_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P06660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-86TCP family protein